Vincent Rodin
Publication list ⁄ Liste de publications


The information provided here are only related to my research activities carried out in a first time at Brest National Engineering School (ENIB),
from September 1995 to October 2006, and then at University of Brest (France) since October 2006.
English

Les informations données ici ne sont relatives qu'à mes activités de recherche effectuées tout d'abord à l'Ecole Nationale d'Ingénieurs de Brest (ENIB),
de septembre 1995 à octobre 2006, puis à l'Université de Brest (France) depuis d'octobre 2006.
Français

    Accreditation thesis (in french) ⁄ Mémoire d'Habilitation à Diriger des Recherches (HDR)

  1. V. Rodin.
    Contribution à l'utilisation de l'Informatique en Biologie.
    Mémoire d'Habilitation à Diriger des Recherches, Université de Rennes I, Rennes (France), 6 Décembre 2004.
    Document [pdf] , Résumé [pdf] , Présentation [ppt] [pdf] , Rapports [pdf]

    Peer-reviewed international journals ⁄ Revues internationales à comité de lecture

  2. H. Troadec, A. Benzinou, V. Rodin and J. Le Bihan.
    Use of deformable template for two-dimensional growth ring detection of otoliths by digital image processing: Application to plaice (pleuronectes platessa) otoliths.
    Fisheries Research, Elsevier, 46(1-3):155-163, May 2000.
    [doi] [pdf]
  3. A. Guillaud, H. Troadec, A. Benzinou, J. Le Bihan and V. Rodin.
    A multiagent system for edge detection and continuity perception on fish otolith images.
    EURASIP Journal on Applied Signal Processing, Hindawi/Springer, 2002(7):746-753, July 2002.
    [doi] [pdf]
  4. A. Guillaud, H. Troadec, A. Benzinou, V. Rodin and J. Le Bihan.
    Autonomous agents for edge detection and continuity perception on otolith images.
    Image and Vision Computing, Elsevier, 20(13-14):955-968, December 2002.
    [doi] [pdf]
  5. G. Desmeulles, D. Dupré, V. Rodin and L. Misery.
    Multi-agents computer simulation: towards a new way of research in allergy and immunodermatology.
    Journal of Investigative Dermatology, Elsevier, 121(6):1570, December 2003.
    [doi] [pdf]
  6. V. Rodin, A. Benzinou, A. Guillaud, P. Ballet, F. Harrouet, J. Tisseau and J. Le Bihan.
    An immune oriented multi-agent system for biological image processing.
    Pattern Recognition, Elsevier, 37(4):631-645, April 2004.
    [doi] [pdf]
  7. G. Desmeulles, V. Rodin and L. Misery.
    In virtuo model for the allergic urticaria: Preliminary results.
    Journal of Investigative Dermatology, Elsevier, 125(6):A15, December 2005.
    [doi] [pdf]
  8. G. Desmeulles, G. Querrec, P. Redou, S. Kerdélo, L. Misery, V. Rodin and J. Tisseau.
    The virtual reality applied to the biology understanding: the in virtuo experimentation.
    Expert Systems with Applications, Elsevier, 30(1):82-92, January 2006.
    [doi] [pdf]
  9. P. Ballet, S. Tripodi and V. Rodin.
    MorphoBlock Programming: a way to model and simulate morphogenesis of multicellular organisms.
    Journal of Biological Physics and Chemistry, AMSI & Collegium Basilea, 9(1):37-44, March 2009.
    [doi] [pdf]
  10. G. Desmeulles, S. Bonneaud, P. Redou, V. Rodin and J. Tisseau.
    In virtuo Experiments Based on the Multi-Interaction System Framework : the RéISCOP Meta-Model.
    CMES: Computer Modeling in Engineering & Sciences, Tech Science Press, 47(3):299-330, 2009.
    [doi] [pdf]
  11. S. Tripodi, P. Ballet and V. Rodin.
    Multilayer cell proliferation with an adaptation of cellular Potts model.
    Journal of Biological Physics and Chemistry, AMSI & Collegium Basilea, 10(1):33-38, March 2010.
    [doi] [pdf]
  12. P. Redou, L. Gaubert, G. Desmeulles, P.A. Béal, C. Le Gal and V. Rodin.
    Absolute stability of chaotic asynchronous multi-interactions schemes for solving ODE.
    CMES: Computer Modeling in Engineering & Sciences, Tech Science Press, 70(1):11-40, 2010.
    [doi] [pdf]
  13. V. Rodin, G. Desmeulles, P. Ballet, P. Redou and C. Le Gal.
    An efficient algorithm based on weak synchronization for distributed in virtuo biological experiments.
    Multiagent and Grid Systems, IOS Press, 7(4-5):159-182, November 2011.
    [doi] [pdf]
  14. S. Tripodi, P. Ballet and V. Rodin.
    GPU implementation and performance analysis of reactive agents having division and mobility capacities.
    Multiagent and Grid Systems, IOS Press, 8(4):289-309, December 2012.
    [doi] [pdf]
  15. A. Jeannin-Girardon, P. Ballet and V. Rodin.
    A Software Architecture for Multi-Cellular System Simulations on Graphics Processing Units.
    Acta Biotheoretica, Springer, 61(3):317-327, September 2013.
    [doi] [pdf]
  16. N. Benyettou, A. Benyettou, V. Rodin and S. Yahia Berrouiguet.
    The Multi-Agents Immune System for Network Intrusions Detection (MAISID).
    Oriental Journal of Computer Science and Technology, Oriental Scientific Publishing, 6(4):383-390, December 2013.
    [url] [pdf]
  17. A. Jeannin-Girardon, P. Ballet and V. Rodin.
    Large scale tissue morphogenesis simulation on heterogenous systems based on a flexible biomechanical cell model.
    IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB), IEEE, 12(5):1021-1033, September/October 2015.
    [doi] [pdf]
  18. A. Sarr, A. Désilles, A. Fronville and V. Rodin.
    A viability approach for robustness measurement, organizational autopoiesis and cell turnover in a multicellular system.
    Journal of Computational Biology, Mary Ann Liebert, 23(4):256-269, April 2016.
    [doi] [pdf]
  19. A. Fronville, A. Sarr and V. Rodin.
    Modelling multi-cellular growth using morphological analysis.
    Discrete and Continuous Dynamical Systems - Serie B (DCDS-B), American Institute of Mathematical Sciences (AIMS), 22(1):83-99, January 2017.
    [doi] [pdf]
  20. A. Fronville, A. Sarr and V. Rodin.
    Viability kernel algorithm for shapes equilibrium.
    Cell and Tissue Engineering, American Institute of Mathematical Sciences (AIMS), 1(2):118-139, September 2017.
    [doi] [pdf]
  21. S. Apeke, L. Gaubert, N. Boussion, P. Lambin, D. Visvikis, V. Rodin and P. Redou.
    Multi-scale modeling and oxygen impact on tumoral temporal evolution: Application on rectal cancer during radiotherapy.
    IEEE Transactions on Medical Imaging (TMI), IEEE, 37(4):871-880, April 2018.
    [doi] [pdf]
  22. N.T. Trieu, Z.E.S. Williams, J.F.M. Dorville, H.X. Huynh, V. Rodin and B. Pottier.
    Open Data for Environment Sensing: Crowdsourcing Geolocation Data.
    EAI Endorsed Transactions on Context-Aware Systems and Applications (CASA), European Union Digital Library (EUDL), 7(20):e4, May 2020.
    [doi] [pdf]

    Peer-reviewed french journal ⁄ Revue française à comité de lecture

  23. G. Desmeulles, D. Dupré, V. Rodin et L. Misery.
    Mise au point d'un modèle de recherche in virtuo sur la réaction allergique.
    Annales de Dermatologie et de Vénéréologie, Elsevier/Masson, 132(8-9):697-701, Septembre 2005.
    [doi] [link] [pdf]

    Book chapters ⁄ Chapitres de livre

  24. J.F. Abgrall, P. Ballet, S. Kerdélo, M. Nicolas, V. Rodin et J. Tisseau.
    L'hématologiste et la coagulation virtuelle.
    Dans Thromboses, sous la direction de C. Leroyer et al., éditions Margaux Orange, pages 287-299, 2004.
    [link] [pdf]
  25. S. Tripodi, P. Ballet and V. Rodin.
    Computational energetic model of morphogenesis based on multi-agent Cellular Potts Model.
    In Advances in Computational Biology, Book Series: Advances in Experimental Medicine and Biology, Springer, volume 680, part VII, chapter 76, pages 685-692, September 2010.
    [doi] [pdf]
  26. P. Ballet, A. Pothet, G. Misevic, A. Jeannin-Girardon, A. Fronville et V. Rodin.
    Une approche multi-agent pour la simulation en biologie cellulaire.
    Dans Le vivant discret et continu - Modes de représentation en biologie théorique, sous la direction de N. Glade & A. Stéphanou. Collection Sciences & Philosophie, éditions Matériologiques, chapitre no 6, pages 155-194, septembre 2013.
    [link] [pdf]
  27. A. Sarr, A. Fronville and V. Rodin.
    A directional cellular dynamic under the control of a diffusing energy for tissue morphogenesis: phenotype and genotype.
    In Emerging Trends in Applications and Infrastructures for Computational Biology, Bioinformatics, and Systems Biology, Elsevier, chapter 2, pages 17-35, April 2016.
    [doi] [pdf]
  28. P. Ballet, J. Rivière, A. Pothet, M. Theron, K. Pichavant, F. Abautret, A. Fronville and V. Rodin.
    Modelling and Simulating Complex Systems in Biology: Introducing NetBioDyn – A Pedagogical and Intuitive Agent-Based Software.
    In Multi-Agent-Based Simulations Applied to Biological and Environmental Systems, IGI Global, chapter 6, pages 128-158, 2017.
    [doi] [pdf]

    Invited international conferences ⁄ Conférences internationales invitées

  29. V. Rodin.
    Systèmes multi-agents et biologie.
    NTICRI'09, Colloque International sur les Nouvelles Techniques Immuno-Cognitives dans les Réseaux Informatiques, Ain El Turck-Oran (Algérie), 10 mai 2009.
    [pdf]
  30. V. Rodin, A. Jeannin-Girardon, A. Sarr, J. Rivière, A. Fronville and P. Ballet.
    A multiagent approach for virtual tissue morphogenesis.
    The 2nd Symposium on Complex Biodynamics & Networks, page 54, Tsuruoka (Japan), 11-13 may 2015.
    [link] [pdf], Presentation [pdf] [pptx], Videos [mp4]

    Invited national conferences ⁄ Conférences nationales invitées

  31. V. Rodin.
    Apport de la modélisation numérique à la compréhension des phénomènes biologiques: un exemple en immunologie.
    Séminaire de l'Institut de Médecine Théorique (IMTh): Introduction à la modélisation numérique en recherche biomédicale, Lyon (France), 25-29 mars 2008.
    [pdf]
  32. V. Rodin.
    Modélisation multi-agents et aide à la compréhension de phénomènes physiologiques.
    10ème Atelier thématique de l'axe Vectorisation & Radiothérapie du Cancéropôle Grand Ouest. Modélisation multiparamétrique en cancérologie: de l'atome au patient, pages 12-13, Nantes (France), 12 juin 2015.
    [pdf], Présentation [pdf] [pptx], Vidéos [mp4]

    Peer-reviewed international conference proceedings ⁄ Actes de conférences internationales à comité de lecture

  33. V. Rodin, H. Troadec, H. De Pontual, A. Benzinou, J. Tisseau and J. Le Bihan.
    Growth ring detection on fish otoliths by a graph construction.
    ICIP'96, IEEE International Conference on Image Processing, volume 2, pages 685-688, Lausanne (Switzerland), 16-19 September 1996.
    [doi] [pdf]
  34. F. Gaudillat, V. Rodin and J. Tisseau.
    Real-time tracking movements using a video camera and a position sensor.
    FIVE'96, Framework for Immersive Virtual Environments II, pages 70-72, Pisa (Italy), 19-20 December 1996.
    [pdf]
  35. A. Benzinou, H. Troadec, J. Le Bihan, V. Rodin, H. De Pontual and J. Tisseau.
    The locally deformable B-Bubble model: An application to growth ring detection on fish otoliths.
    SCIA'97, IAPR Scandinavian Conference on Image Analysis, volume 1, pages 181-187, Lappeenranta (Finland), 9-11 June 1997.
    [pdf]
  36. P. Ballet, V. Rodin and J. Tisseau.
    Edge detection using a multiagent system.
    SCIA'97, IAPR Scandinavian Conference on Image Analysis, volume 2, pages 621-626, Lappeenranta (Finland), 9-11 June 1997.
    [pdf]
  37. P. Ballet, V. Rodin and J. Tisseau.
    A multiagent system for detecting concentric strias.
    Applications of Digital Image Processing XX. SPIE's Optical Sciences, Engineering And Instrumentation'97, volume 3164, pages 659-666, San Diego, CA (USA), 27 July-1 August 1997.
    [doi] [pdf]
  38. P. Ballet, V. Rodin and J. Tisseau.
    Multiagent boundary detection system: A way to parallel image processing.
    Parallel and Distributed Methods for Image Processing I. SPIE's Optical Sciences, Engineering And Instrumentation'97, volume 3166, pages 316-323, San Diego, CA (USA), 27 July-1 August 1997.
    [doi] [pdf]
  39. P. Ballet, V. Rodin and J. Tisseau.
    A multiagent system to model and simulate in-vitro experimentations.
    ISAS'98, IIIS 4th International Conference on Information Systems, Analysis and Synthesis, volume 2, pages 1-7, Orlando (USA), 12-16 July 1998.
    [pdf]
  40. V. Rodin, S. Morvan and A. Nédélec.
    ARéVi: A distributed virtual reality toolkit based on an oriented multiagent language.
    PDPTA'98, International Conference on Parallel and Distributed Processing Techniques And Applications, volume 1, pages 159-166, Las Vegas (USA), 13-16 July 1998.
    [pdf]
  41. V. Rodin, F. Harrouet, P. Ballet and J. Tisseau.
    oRis: Multiagents approach for image processing.
    Image Processing II. SPIE's Optical Sciences, Engineering And Instrumentation'98, volume 3452, pages 57-68, San Diego, CA (USA), 19-24 July 1998.
    [doi] [pdf]
  42. P. Ballet, J.O. Pers, V. Rodin and J. Tisseau.
    A multi-agent system to simulate an apoptosis model of B-CD5 cells.
    SMC'98, IEEE International Conference on Systems, Man and Cybernetics, volume 2, pages 3799-3804, San Diego, CA (USA), 11-14 October 1998.
    [doi] [pdf]
  43. A. Guillaud, P. Ballet, H. Troadec, V. Rodin, A. Benzinou and J. Le Bihan.
    A multiagent system for edge detection. An application to growth ring detection on fish 0toliths.
    IPA'99, IEE International Conference on Image Processing & Applications, pages 445-449, Manchester (UK), 13-15 July 1999.
    [doi] [pdf]
  44. V. Rodin and A. Nédélec.
    oRis: An agents communication language for distributed virtual environment.
    RO-MAN'99, 8th IEEE International Workshop on Robot and Human Interaction, pages 41-46, Pisa (Italy), 27-29 September 1999.
    [doi] [pdf]
  45. A. Guillaud, A. Benzinou, H. Troadec, V. Rodin and J. Le Bihan.
    Parametrization of a multi-agent system for roof edge detection. An application to growth ring detection on fish otoliths.
    Visual Data Exploration and Analysis VII. SPIE's Electronic Imaging 2000, Science and Technology, volume 3961, pages 196-207, San Jose, CA (USA), 22-28 January 2000.
    [doi] [pdf]
  46. P. Ballet, V. Rodin and J. Tisseau.
    Immune mechanisms to regulate multi-agent systems.
    GECCO'00, Genetic and Evolutionary Computation COnference, pages 33-35, Las Vegas (USA), 8 July 2000.
    [pdf]
  47. A. Guillaud, H. Troadec, A. Benzinou, V. Rodin and J. Le Bihan.
    Continuity perception using a multiagent system, an application to growth ring detection on fish otoliths.
    ICPR'2000, IAPR 15th International Conference on Pattern Recognition, volume 2, pages 519-522, Barcelone (Spain), 3-8 September 2000.
    [doi] [pdf]
  48. P. Ballet, J.F. Abgrall, V. Rodin and J. Tisseau.
    Simulation of thrombin generation during plasmatic coagulation and primary hemostasis.
    SMC'00, IEEE International Conference on System, Man & Cybernetics, volume 1, pages 131-136, Nashville (USA), 8-11 October 2000.
    [doi] [pdf]
  49. V. Rodin and A. Nédélec.
    A multiagent architecture for distributed virtual environments.
    SMC'00, IEEE International Conference on System, Man & Cybernetics, volume 2, pages 955-960, Nashville (USA), 8-11 October 2000.
    [doi] [pdf]
  50. A. Nédélec, P. Reignier and V. Rodin.
    Collaborative prototyping in Distributed Virtual Reality using an agent communication language.
    SMC'00, IEEE International Conference on System, Man & Cybernetics, volume 2, pages 1007-1012, Nashville (USA), 8-11 October 2000.
    [doi] [pdf]
  51. A. Guillaud, H. Troadec, A. Benzinou, V. Rodin and J. Le Bihan.
    A multiagent system for edge detection and continuity perception on otolith images.
    QCAV'2001, 5th International Conference on Quality Control by Artificial Vision, volume 2, pages 342-347, Le Creusot (France), 21-23 May 2001.
    [pdf]
  52. M. Nicolas, J.F. Abgrall, V. Rodin, P. Ballet and J. Tisseau.
    Multiagent simulation of blood coagulation.
    ISTH'01, Congress of the International Society on Thrombosis and Haemostasis, Supplement to the Journal Thrombosis and Haemostasis, page 2139, Paris (France), 6-12 July 2001.
    [link] [pdf]
  53. V. Raulet, A. Nédélec and V. Rodin.
    Coupling HLA with a MAS based DVR environment.
    IASTED International Conference - Applied Informatics, pages 239-242, Innsbruck (Austria), 18-21 February 2002.
    [url] [pdf]
  54. V. Raulet, V. Rodin and A. Nédélec.
    oRisDis: Using HLA and dynamic features of oRis multi-agent platform for cooperative prototyping in virtual environments.
    European Simulation Interoperability Workshop 2002 (02E-SIW-022), SISO, London (UK), 24-26 June 2002.
    [link] [pdf]
  55. G. Querrec, V. Rodin, J.F. Abgrall, S. Kerdélo and J. Tisseau.
    Uses of multiagents systems for simulation of MAPK pathway.
    BIBE'03, 3rd IEEE International Symposium on Bioinformatics and BioEngineering, pages 421-425, Bethesda (USA), 10-12 March 2003.
    [doi] [pdf]
  56. V. Raulet, V. Rodin and A. Nédélec.
    Using HLA to provide a collaborative multiagent virtual prototyping platform.
    Spring Simulation Interoperability Workshop 2003 (03S-SIW-051), SISO, Orlando (USA), 30 March - 4 April 2003.
    [link] [pdf]
  57. V. Raulet, A. Nédélec and V. Rodin.
    A new API to the HLA declaration and object management services for runtime modifications.
    European Simulation Interoperability Workshop 2003 (03E-SIW-092), SISO, pages 600-607, Stockholm (Sweden), 16-19 June 2003.
    [link] [pdf]
  58. G. Querrec, V. Rodin, J.F. Abgrall, S. Kerdélo and J. Tisseau.
    Use of Multiagents System for Simulation in Systems Biology.
    BioMed 2003, IASTED International Conference on Biomedical Engineering, pages 48-53, Salzburg (Austria), 25-27 June 2003.
    [url] [pdf]
  59. G. Querrec, F.R. Bataille, V. Rodin, J.F. Abgrall and J. Tisseau.
    Computer simulation of multiple myeloma in the context of systems biology.
    In 10th International Myeloma workshop, volume 90, supplement no 1 of Haematologica, the haematology journal, pages 92-93, Sydney (Australia), 10-14 April 2005.
    [link] [pdf]
  60. G. Desmeulles, P. Redou, L. Misery and V. Rodin.
    A multiagent and multimodel approach for the experimentation on biological complex systems.
    WMSCI'2005, 9th World Multi-Conference on Systemics, Cybernetics and Informatics, volume 6, pages 142-147, Orlando, Florida (USA), 10-13 July 2005.
    [pdf]
  61. P. Redou, S. Kerdélo, C. Le Gal, G. Querrec, V. Rodin, J.F. Abgrall and J. Tisseau.
    Reaction-agents: First mathematical validation of a multi-agent system for dynamical biochemical kinetics.
    EPIA'05, 12th Portuguese Conference on Artificial Intelligence, Covilhã (Portugal), 5-8 December 2005. Published in Progress in Artificial Intelligence; Lecture Notes in Computer Science (LNAI), Springer, volume 3808, pages 156-166, December 2005.
    [doi] [pdf]
  62. M. Bourhis, V. Rodin and G. Querrec.
    SPiC-MAS: a multiagent simulation of stochastic π-calculus models.
    Biocomp'06, International Conference on Bioinformatics & Computational Biology, pages 229-235, Las Vegas, Nevada (USA), 26-29 June 2006.
    [pdf]
  63. P. Redou, S. Kerdélo, G. Desmeulles, J.F. Abgrall, V. Rodin and J. Tisseau.
    Formal validation of asynchronous interaction-agents algorithms for reaction-diffusion problems.
    PADS'07, 21st IEEE International Workshop on Principles of Advanced and Distributed Simulation, pages 93-101, San Diego, California (USA), 12-15 June 2007.
    [doi] [pdf]
  64. M. Bourhis and V. Rodin.
    A multiagent view of grid computing for biological simulations in virtual reality.
    ESM'07, 21st annual European Simulation and Modelling Conference, pages 447-451, St Julian's (Malta), 22-24 October 2007.
    [link] [pdf]
  65. R. Fablet, J.F. Bardeau, A. Benzinou, A. Chessel, A. Jolivet, M. Labonne, A. Lorrain, Y.M. Paulet, V. Rodin and H. de Pontual.
    Understanding otolith biomineralization: from physico-chemical signatures to numerical modelling.
    Symposium Ecosystem Approach to Fisheries, pages 9-11, Boulogne-sur-Mer (France), 5-7 November 2008.
    [pdf]
  66. M. Bourhis, G. Desmeulles, S. Bonneaud, F. Guerrero and V. Rodin.
    Data consistency in distributed virtual reality simulations applied to biology.
    ICAS'09, 5th International Conference on Autonomic and Autonomous Systems, IEEE Computer Society, pages 154-161, Valencia (Spain), 20-25 April 2009.
    [doi] [pdf]
  67. V. Rodin, G. Querrec, P. Ballet, F.R. Bataille, G. Desmeulles, J.F. Abgrall and J. Tisseau.
    Multi-Agents System to model cell signalling by using Fuzzy Cognitive Maps. Application to computer simulation of Multiple Myeloma.
    BIBE'09, 9th IEEE International Conference on Bioinformatics and Bioengineering, pages 236-241, Taichung (Taiwan), 22-24 June 2009.
    [doi] [pdf]
  68. G. Desmeulles, V. Ferec, P. Redou, V. Rodin and A.C. Roudot.
    A new PBTK modelling method based on multi-interaction paradigm.
    FOODSIM'2010, Food Simulation Conference, pages 154-157, Braganca (Portugal), 24-26 June 2010.
    [link] [pdf]
  69. S. Tripodi, P. Ballet and V. Rodin.
    Self-organization of a virtual multicellular organism by adding a shape model in the Cellular Potts Model.
    Artificial Life XII, 12th International Conference on the Synthesis and Simulation of Living Systems (ALIFE), pages 249-256, Odense (Denmark), 19-23 August 2010.
    [link] [pdf]
  70. A. Fronville, A. Sarr, P. Ballet and V. Rodin.
    Mutational analysis-inspired algorithms for cells self-organization towards a dynamic under viability constraints.
    SASO 2012, 6th IEEE International Conference on Self-Adaptive and Self-Organizing Systems, pages 181-186, Lyon (France), 10-14 September 2012.
    [doi] [pdf]
  71. A. Sarr, A. Fronville, P. Ballet and V. Rodin.
    French flag tracking by morphogenetic simulation under developmental constraints. - Short version -
    CIBB 2013, 10th International Meeting on Computational Intelligence Methods for Bioinformatics and Biostatistics, paper 66, 12 pages, Nice (France), 20-22 June 2013.
    [link] [pdf]
  72. A. Jeannin-Girardon, P. Ballet and V. Rodin.
    In silico study of mechanical stresses at the cellular level during tissue development.
    BIBE 2013, 13th IEEE International Conference on BioInformatics and BioEngineering, 4 pages, Chania (Greece), 10-13 November 2013.
    [doi] [pdf]
  73. A. Jeannin-Girardon, P. Ballet and V. Rodin.
    An Efficient Biomechanical Cell Model to Simulate Large Multi-cellular Tissue Morphogenesis: Application to Cell Sorting Simulation on GPU.
    TPNC 2013, 2nd International Conference on the Theory and Practice of Natural Computing, Cáceres (Spain), 3-5 December 2013. Published in Lecture Notes in Computer Science (LNCS), Springer, volume 8273, pages 96-107, December 2013.
    [doi] [pdf]
  74. A. Sarr, A. Fronville, P. Ballet and V. Rodin.
    French flag tracking by morphogenetic simulation under developmental constraints. - Long version -
    CIBB 2013, 10th International Meeting on Computational Intelligence Methods for Bioinformatics and Biostatistics, Nice (France), 20-22 June 2013. Revised Selected Paper published in Lecture Notes in Bioinformatics a subseries of Lecture Notes in Computer Science (LNCS), Springer, volume 8452, pages 90-106, July 2014.
    [doi] [pdf]
  75. N. Benyettou, A. Benyettou and V. Rodin.
    An immune agents system for network intrusions detection.
    SAI-2014, Third International Conference on Soft Computing, Artificial Intelligence and Applications, Dubai (UAE), 7-8 November 2014. Publish in Computer Science & Information Technology (CS&IT) series, AIRCC Publishing, volume 4, number 11, pages 1-11, November 2014.
    [doi] [pdf]
  76. A. Sarr, A. Fronville and V. Rodin.
    Morphogenesis Model for Systematic Simulation of Forms' Co-evolution With Constraints : Application to Mitosis.
    TPNC 2014, 3rd International Conference on Theory and Practice of Natural Computing, Granada (Spain), 9-11 December 2014. Published in Theoretical Computer Science and General Issues a subseries of Lecture Notes in Computer Science (LNCS), Springer, volume 8890, pages 231-242, December 2014.
    [doi] [pdf]
  77. G. Desmeulles, F. Harrouet, D. Thuault, V. Huchet, P. Redou, L. Gaubert, G. Longelin Péron, P. Ballet and V. Rodin.
    3D individual based model for simultaneous growth and interaction of L. Monocytogenes and lactic acid bacteria.
    ICPMF9, 9th International Conference on Predictive Modelling in Food, pages 11-12, Rio de Janeiro (Brazil), 8-12 September 2015.
    [link] [pdf]
  78. A. Sarr, P. Miglierini, A. Fronville and V. Rodin.
    Directional cellular dynamics for tissue morphogenesis and tumour characterization by aggressive cancer cells identification.
    BIOSTEC 2016, 9th International Joint Conference on Biomedical Engineering Systems and Technologies, volume 3: Bioinformatics, pages 290-295, Rome (Italy), 21-23 February 2016.
    [doi] [pdf]
  79. O.N. Persada Goubier, H.X. Huynh, T.P. Truong, M. Traoré and the SAMES group (Stic Asia Models for Environment and Simulation group: B. Pottier, V. Rodin, B. N'Som, L. Esclade, R.N. Rakotoarijaona, O.N. Persada Goubier, S. Stinckwich, H.X. Huynh, B.H. Lam, H.T. Vinh, U. Al Hanif, H. Muslim, T.P. Surono).
    Wireless Sensor Network based Monitoring, Cellular Modeling and Simulations for Environment.
    ICT-Bio Asia 2016, BIO/ICT-Asia Workshop, Kuala Lumpur (Malaysia), 30-31 May 2016. Published in the Academy of Sciences Malaysia (ASM) Science Journal, Special Issue 2017(1) ICT-Bio:56-65, May 2017.
    [link (Workshop)] [link (Journal)] [pdf] Presentation [pdf]
  80. N. Benyettou, A. Benyettou and V. Rodin.
    The Cooperation of Immune Agents for Intrusion Detection System.
    ICIDE 2017, International Conference on Industrial Design Engineering, ACM New York, pages 133-137, Dubai (UAE), 29-31 December 2017.
    [doi] [pdf]
  81. J. Rivière, C. Alaux, Y. Le Conte, Y. Layec, A. Lozac'h, V. Rodin and F. Singhoff.
    Toward a Complete Agent-Based Model of a Honeybee Colony.
    International Workshop on Multi-Agent Systems and Simulation of PAAMS 2018 (International Conference on Practical Applications of Agents, Multi-Agent Systems), Toledo (Spain), 20-22 June 2018. Published in PAAMS Collection: Highlights of Practical Applications of Agents, Multi-Agent Systems, and Complexity. Communications in Computer and Information Science (CCIS), Springer, volume 887, pages 493-505, June 2018.
    [doi] [pdf]
  82. M.T.T. Truong, S. Syed Yazdani, B. Pottier, V. Rodin and H.X. Huynh.
    Multiscale Geographic Exploration, Observation, Simulation, and Representation.
    MACS-13, 13th International Conference on Mathematics, Actuarial Science, Computer Science & Statistics, IEEE Computer Society, 8 pages, Karachi (Pakistan), 14-15 December 2019.
    [doi] [pdf]
  83. T. Alves, J. Rivière, C. Alaux, Y. Le Conte, F. Singhoff, T. and V. Rodin.
    An Interruptible Task Allocation Model - Application to a Honey Bee Colony Simulation.
    PAAMS 2020, 18th International Conference on Practical Applications of Agents, Multi-Agent Systems, Aquila (Italy), 7-9 October 2020. Published in PAAMS Collection: Advances in Practical Applications of Agents, Multi-Agent Systems, and Trustworthiness. Lecture Notes in Computer Science (LNCS), Springer, volume 12092, pages 3-15, June 2020.
    [doi] [pdf]
  84. N.T. Trieu, H.X. Huynh, V. Rodin and B. Pottier.
    Interpretable Machine Learning for Meteorological Data.
    CMLSC 2021, 5th International Conference on Machine Learning and Soft Computing, pages 11-17, Sanya (China), 29-31 January, 2021.
    [doi] [pdf]

    Peer-reviewed international conference proceedings, Poster Session ⁄ Actes de conférences internationales à comité de lecture, Session Poster

  85. V. Rodin, V. Raulet and A. Nédélec.
    Using a multiagent language for collaborative interactive prototyping.
    CVE'2000, The Third International Conference on Collaborative Virtual Environments, ACM Press, Poster Session, pages 205-206, San Francisco, CA (USA), 10-12 September 2000.
    [doi] [pdf]
  86. N. Benyettou, A. Benyettou and V. Rodin.
    An Immune Multi-Agents System used in the Intrusion Detection System in distributed Network.
    ICARIS 2012, 11th International Conference on Artificial Immune Systems, Poster Session, page 36 (conference programme), Taormina (Italy), 28-31 August 2012.
    [link] [pdf]
  87. J. Rivière, P. Ballet and V. Rodin.
    NetBioDyn, a smart Agent-Based software to intuitively model and simulate complex biological systems.
    CCS 2016, the 2016 Conference on Complex Systems, Poster Session, Poster #253, Amsterdam (Netherlands), 19-22 September 2016.
    [link] [pdf]
  88. T. Alves, J. Rivière, V. Rodin and T. Duval.
    Immersive and interactive visualisation of a virtual honey bee colony.
    EuroVR 2019, 16th EuroVR International Conference on Virtual Reality and Augmented Reality, Poster Session, Tallinn (Estonia), 23-25 October 2019. Published in Lecture Notes in Computer Science (LNCS), Springer, volume 11883, pages 324-329, October 2019.
    [doi] [pdf]

    Peer-reviewed national conference proceedings ⁄ Actes de conférences nationales à comité de lecture

  89. V. Rodin, F. Gaudillat et J. Tisseau.
    Fusion de données électromagnétiques et vidéos pour le suivi de mouvements temps réel.
    Interfaces'97. La lettre de l'IA (EC2 Ed.), volume 123, pages 28-31, Montpellier (France), 28-30 Mai 1997.
    [pdf]
  90. P. Ballet, V. Rodin et J. Tisseau.
    Intérêts mutuels des systèmes multi-agents et de l'immunologie.
    CID'98, Complexité, Intelligence et Décision, XXVIème colloque de l'ARAE, pages 141-153, Lyon (France), 7-8 Juillet 1998.
    [pdf]
  91. G. Desmeulles, D. Dupré, V. Rodin et L. Misery.
    Mise au point d'un modèle de recherche in virtuo de la réaction allergique.
    JDP'2003, Journées Dermatologiques de Paris. Supplément des annales de dermatologie et de vénéréologie, Masson Editeur, Communication orale C110, volume 130, pages 71-72, Paris (France), 2-6 Décembre 2003.
    [pdf]
  92. G. Desmeulles, V. Rodin et L. Misery.
    Modèle in virtuo d'urticaire allergique: résultats préliminaires.
    CARD'2005, Congrès Annuel de la Recherche Dermatologique, Communication orale C12, page 18, Brest (France), 27-28 Mai 2005.
    [pdf]
  93. J.F. Abgrall, S. Kerdélo, G. Querrec, F. Le Corre, V. Rodin, F.R. Bataille et J. Tisseau.
    Un laboratoire virtuel pour l'hématologie.
    Congrès annuel de la Société Française d'Hématologie (SFH). Revue Hématologie, no spécial 1, volume 12, page 158, Paris (France), 23-25 Mars 2006.
    [link] [pdf]
  94. A. Jeannin-Girardon et V. Rodin.
    Gestion efficace des ressources mémoire et de calcul pour l'exécution de systèmes multi-agents sur architectures parallèles avec OpenCL.
    Compas'2016, Conférence d'Informatique en Parallélisme, Architecture et Système, Session parallélisme #5: Support d'exécution, P5.1, 8 pages, Lorient (France), 5-8 juillet 2016.
    [link] [pdf], Présentation [pdf] [pptx], Vidéos [mp4]
  95. J. Rivière, C. Alaux, Yves Le Conte, Y. Layec, A. Lozac'h, V. Rodin et F. Singhoff.
    Recrutement et auto-organisation : Vers un modèle multi-agent complet d'une colonie d'abeilles.
    JFSMA'18, vingt-sixièmes Journées Francophones sur les Systèmes Multi-Agents, Cépaduès Editions, pages 149-158, Métabief (France), 10-12 Octobre 2018.
    [link] [pdf]
  96. S.E. Mili, D. Meslati and V. Rodin.
    The Use of Model Driven Architecture to Describe Bio-Inspired System: Case of Artificial Neural Network.
    COSI'2019, Colloque sur l'Optimisation et les Systèmes d'Information, 12 pages, Tizi-Ouzou (Algérie), 24-26 Juin 2019.
    [link] [pdf]
  97. T. Alves, J. Rivière, C. Alaux, Y. Le Conte, F. Singhoff, T. Duval et V. Rodin.
    Modèle d'interruption pour la répartition des tâches: application à une simulation de colonie d'abeilles.
    CNIA 2020, 23ème Conférence Nationale d'Intelligence Articifielle, Rencontres des Jeunes Chercheurs en Intelligence Artificielle (RJCIA), pages 31-38, 29 juin-3 juillet 2020.
    [link] [pdf]

    Peer-reviewed national conference proceedings, Poster Session ⁄ Actes de conférences nationales à comité de lecture, Session Poster

  98. G. Desmeulles, D. Dupré, V. Rodin et L. Misery.
    La simulation informatique multi-agents: Vers une nouvelle voie de recherche en allergologie et en immunodermatologie.
    CARD'2003, Congrès Annuel de la Recherche Dermatologique, Session Posters, Poster P31, page 83, Rouen (France), 12-13 Juin 2003.
    [pdf]
  99. S.E. Mili, V. Rodin and D. Meslati.
    The Use of Biology to Describe Bio-Inspired System: Case of Multi Agent Systems.
    COSI'2012, actes des posters du 9ème Colloque sur l'Optimisation et les Systèmes d'Information, pages 11-13, Tlemcen (Algérie), 12-15 Mai 2012.
    [link] [pdf]
  100. J.F. Dorville, T. Truong, B. Pottier, S. Niculescu et V. Rodin.
    Conception d'un système d'information environnemental (SysEnv) pour le suivi à long terme de la pollution des sols par un organochloré : cas de la Basse-Terre.
    Colloque Scientifique et d'information sur la pollution par la Chlordécone, Schœlcher en Martinique et Le Gosier en Guadeloupe (France), 2 pages, 16-19 Octobre 2018.
    [link] [pdf]
  101. M.T.T. Truong, V. Rodin and B. Pottier.
    Cellular approach and accurate large scale environment simulation. Numerical algorithms for high-performance computational sciences Discussion Meeting, Poster Session, Poster #20, The Royal Society, London (UK), 8-9 april 2019.
    [link] [pdf] [Poster]

    National conference proceedings ⁄ Actes de conférences nationales sans comité de lecture

  102. V. Rodin.
    Conseils pratiques pour la réalisation d'un serveur web.
    5èmes journées du Technopôle Brest-Iroise, thème: ingénierie des autoroutes de l'information, pages 1-6, Brest (France), 17-18 Octobre 1996.
    [pdf]
  103. G. Querrec, V. Rodin, J.F. Abgrall et J. Tisseau.
    Modélisation de la voie des MAPK par un graphe d'inférences flou pour les simulations multi-agents.
    Séminaire sur la modélisation et la simulation de processus biologiques dans le contexte de la génomique, page 155, Dieppe (France), 11-16 Mai 2003.
    [link] [pdf]
  104. G. Desmeulles, L. Misery and V. Rodin.
    Modeling systems biology for in virtuo experiments.
    Ecole thématique: Modélisation de systèmes biologiques complexes dans le contexte de la génomique, pages 119-120, Montpellier (France), 4-8 Avril 2005.
    [link] [pdf]
  105. G. Querrec, F.R. Bataille, V. Rodin, J.F. Abgrall and J. Tisseau.
    Computer simulation of multiple myeloma in the context of systems biology.
    Ecole thématique: Modélisation de systèmes biologiques complexes dans le contexte de la génomique, page 159, Montpellier (France), 4-8 Avril 2005.
    [link] [pdf]
  106. V. Rodin, J.F. Abgrall, G. Desmeulles, S. Kerdélo, F. Le Corre, G. Querrec, P. Redou et J. Tisseau.
    Expérimentation in virtuo en biologie.
    Journée "Le calcul et la simulation pour le médicament" (CINES), pages 1-2, Montpellier (France), 12 mai 2005.
    [pdf]
  107. G. Desmeulles, P. Redou, J.F. Abgrall, V. Rodin and J. Tisseau.
    Autonomous interactions for in virtuo experience of multi-model and multi-scale complex biological systems.
    Proceedings of The Evry Spring School on Modelling Complex Biological Systems in the Context of Genomics, page 129, Evry (France), 30 April-4 May 2007.
    [link] [pdf]
  108. P. Ballet, P. Redou, S. Tripodi and V. Rodin.
    Lambda phage switch: a spatialised and stochastic approach.
    Tutorials of Modeling a biological switch, spring school on Modeling Complex Biological Systems in the Context of Genomics, pages 79-90, La Colle-Sur-Loup (France), 30 March-3 April 2009.
    [pdf]
  109. A. Fronville, A. Sarr, P. Ballet et V. Rodin.
    Usage de la simulation et de l'analyse morphologique pour l'étude de la dynamique cellulaire.
    32ème séminaire de la société francophone de biologie théorique (SFBT), page 18, St Flour (France), 10-13 juin 2012.
    [link] [pdf]
  110. A. Jeannin-Girardon, P. Ballet et V. Rodin.
    Architecture logicielle pour la conception de simulation de systèmes multi-cellulaires sur GPU.
    32ème séminaire de la société francophone de biologie théorique (SFBT), pages 20-21, St Flour (France), 10-13 juin 2012.
    Lauréate du prix Pierre Delattre (prix du meilleur exposé [pdf]), prix conjointement décerné à 3 étudiants en thèse.
    [link] [pdf]
  111. A. Sarr, A. Fronville, L. Lemarchand, P. Ballet et V. Rodin.
    Evolutions viables de formes par application de mécanismes cellulaires.
    34ème séminaire de la société francophone de biologie théorique (SFBT), pages 7-8, St Flour (France), 26-28 mai 2014.
    [link] [pdf]

    National conference proceedings, Poster Session ⁄ Actes de conférences nationales sans comité de lecture, Session Poster

  112. J. Rivière, P. Ballet, G. Desmeulles, A. Fronville, V. Rodin, A. Sarr, A. Jeannin-Girardon.
    Model and Simulation of Complex Biological Systems.
    BioSynSys 2015: 1er colloque du GDR Biologie de Synthèse et des Systèmes, Session Posters, page 40, Paris (France), 7-10 septembre 2015.
    [link] [pdf]
  113. P. Ballet, A. Fronville, A. Jeannin-Girardon, J. Rivière, V. Rodin and A. Sarr.
    Simulation of Multicellular Systems.
    EURASC 2015, European Academy of Sciences symposium on climate change: impacts on ocean, food production, health and the economy, Poster Session, page 26, Brest (France), 27-28 october 2015.
    [link] [pdf]

    International conferences ⁄ Conférences internationales sans actes

  114. H. Troadec, J. Le Bihan, A. Benzinou and V. Rodin.
    Methods under investigation for analyzing images of fish otoliths; do they prepare the way for the interpretation of cephalopod statoliths?
    First Coordination Meeting of the FAIR CT 96 1520 Programme (Cephalopod Resources Dynamics: Patterns in Environmental and Genetic Variation), Tenerife (Spain), 9-11 April 1997.
  115. A. Benzinou, H. Troadec, J. Le Bihan and V. Rodin.
    Local estimators by data integration or data interpolation on calcified structures for computer assisted interpretation of cephalopod statoliths.
    2nd Coordination Meeting of the FAIR CT 96 1520 Programme (Cephalopod Resources Dynamics: Patterns in Environmental and Genetic Variation), Cork (Ireland), 3-5 April 1998.
  116. H. Troadec, A. Benzinou, H. De Pontual, V. Rodin and J. Le Bihan.
    Time-frequency representation: Application to individual growth estimation.
    2nd International Symposium on Fish Otolith Research & Applications, Bergen (Norway), 20-25 June 1998.
  117. H. Troadec, A. Benzinou, J. Le Bihan and V. Rodin.
    Data integration, data interpolation and space-frequency analysis for computer assisted interpretation of cephalopod statoliths.
    3rd Coordination Meeting of the FAIR CT 96 1520 Programme (Cephalopod Resources Dynamics: Patterns in Environmental and Genetic Variation), Heraklion (Greece), 22-24 March 1999.
  118. V. Rodin.
    Simulation of human physiological systems.
    Annual workshop of the ANR Mitoscop, Brest (France), 11 June 2010.

    National conferences ⁄ Conférences nationales sans actes

  119. S. Morvan, T. Duval, A. Nédélec, P. Reignier, V. Rodin et J. Tisseau.
    Enseignement de la réalité virtuelle: une expérience.
    4èmes journées nationales du Groupe de Travail Réalité Virtuelle du PRC Communications Homme/Machine, Rennes (France), 29-30 Janvier 1996.
    [link] [pdf]
  120. V. Rodin.
    Plate-forme ARéViDIS: prototypage coopératif.
    ARéVi'99, Atelier de Réalité Virtuelle, Brest (France), 11 Juin 1999.
    [pdf]
  121. M. Bourhis et V. Rodin.
    Cohérence des données dans les simulations de réalité virtuelle distribuées appliquées à la biologie. (non publié)
    CDUR'2008, second Workshop sur la Cohérence des Données en Univers Réparti (NOTERE'2008), Session Posters, Lyon (France), 23 Juin 2008.
    [link] [pdf]
  122. S. Apeke, P. Redou, L. Gaubert, N. Boussion, D. Visvikis and V. Rodin.
    Multi-scale modeling and oxygen impact simulation on temporal evolution of rectum cancer treatment by radiotherapy.
    DYnamics and COntrol of TUmor Growth (DYCOTUG) Workshop 2015, Rouen University, CORIA, Rouen (France), 30 Novembre 2015.
    [link] [pdf]
  123. J. Rivière, V. Rodin, F. Singhoff, A. Lozac'h, Y. Layec, M. Résibois, C. Alaux, Y. Le Conte.
    Projet: Simulation interactive d'une ruche virtuelle.
    42ème congrès de la FNOSAD (Fédération Nationale des Organisations Sanitaires Apicoles Départementales), Stand du GDSA 29, Poster, INSA, Rennes (France), 17-19 Novembre 2017.
    [pdf]

Francophone (French-language) press articles ⁄ Articles dans la presse francophone


Publications related to my Ph.D. thesis
Publications relatives à mes travaux de thèse


    Ph.D. thesis (in french) ⁄ Mémoire de thèse de doctorat

  1. V. Rodin.
    Stéréovision Axiale: calibrage, appariement et reconstruction tridimensionnelle - Application en cœliochirurgie.
    Mémoire de Thèse de Docteur en Informatique de l'INP de Toulouse, Toulouse (France), 3 Octobre 1993.
    Document [pdf], Résumé [pdf], Présentation [pdf], Rapports [pdf]

    Peer-reviewed french journal ⁄ Revue française à comité de lecture

  2. V. Rodin et A. Ayache.
    Stéréovision Axiale: Modélisation du Système de Prise de Vues, Reconstruction Tridimensionnelle d'Objets Naturels.
    Traitement du Signal, 11(5):373-391, Novembre 1994.
    [hdl] [pdf]

    Peer-reviewed international conference proceedings ⁄ Actes de conférences internationales à comité de lecture

  3. V. Rodin and A. Ayache.
    A Medical Robotic Application Of Monocular Stereovision - Filtering And Matching Techniques.
    ICARCV'92, IEEE International Conference on Automation, Robotics and Computer Vision, volume 1, pages cv-8.7.1-cv-8.7.5, Singapore, 16-18 September 1992.
    [pdf]
  4. V. Rodin and A. Ayache.
    Monocular Stereovision: A Medical Robotic Application - The Use Of Color.
    Machine Vision Applications, Architectures and Systems Integration. SPIE's OE/TECHNOLOGIE'92, volume 1823, pages 175-185, Boston (USA), 17-18 November 1992.
    [doi] [pdf]
  5. V. Rodin, A. Ayache and Dr N. Berreni.
    Aspects Of Computer Vision In Surgical Endoscopy.
    Image Processing. SPIE's Medical Image VII, volume 1898, pages 284-295, Newport Beach, CA (USA), 14-18 February 1993.
    [doi] [pdf]
  6. V. Rodin and A. Ayache.
    Axial Stereovision: Modelization And Comparison Between Two Calibration Methods.
    ICIP'94, IEEE International Conference on Image Processing, volume 2, pages 725-729, Austin (USA), 13-16 November 1994.
    [doi] [pdf]

    Peer-reviewed national conference proceeding ⁄ Acte de conférence nationale à comité de lecture

  7. V. Rodin et A. Ayache.
    Modélisation d'un Système de Stéréovision Axiale.
    Actes du Congrès AFCET Reconnaissance de Formes et Intelligence Artificielle (RFIA'94), Volume 1, pages 709-714, Paris (France), 11-14 Janvier 1994.
    [pdf]

    National conference proceedings ⁄ Actes de conférences nationales sans comité de lecture

  8. C. Carmona et V. Rodin (ordre alphabétique)
    Aspect Théorique de la Stéréovision Axiale et Application.
    Actes du Colloque GRECO, Traitement du Signal et Image, 2 pages, ENST, Paris (France), 1er Octobre 1992.
    [pdf]
  9. V. Rodin et A. Ayache.
    Stéréovision Axiale: Modélisation et Reconstruction Tridimensionnelle.
    Actes du Colloque du réseau FIRTECH, Informatique, Automatique et Robotique, IRIT, pages 1-7, Toulouse (France), 21 Octobre 1993.

Intership reports (in french) ⁄ Rapports de stage
PFE - DEA


  1. V. Rodin
    Projet R.E.V.E.R.I.E : Contribution à la segmentation et à la représentation symbolique des régions pour le système de vision bas niveau.
    Rapport de fin d'étude.
    INP de Toulouse - Ecole Nationale Supérieure d'Electrotechnique, d'Electronique, d'Informatique et d'Hydraulique de Toulouse (ENSEEIHT), Filière Informatique, Toulouse (France), Juin 1989.
    [pdf]
  2. V. Rodin
    Projet R.E.V.E.R.I.E : Utilisation d'un système expert pour la segmentation d'images en régions et contours.
    Supplément au Rapport de fin d'étude en vue de l'obtention du D.E.A Informatique.
    INP de Toulouse - Ecole Nationale Supérieure d'Electrotechnique, d'Electronique, d'Informatique et d'Hydraulique de Toulouse (ENSEEIHT), Filière Informatique, Toulouse (France), Septembre 1989.
    [pdf]

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